PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G229100.2
Common NameB456_002G229100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 291aa    MW: 31985.1 Da    PI: 7.2015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G229100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09203250455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Gorai.002G229100.2 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250
                         8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-15197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.17E-8197254No hitNo description
Gene3DG3DSA:4.10.280.107.0E-15199267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MESNAGTTET RSNVTVPDGG EVAAFESLQF TDEIHRLISA PATDNASSFT ALLELPATQV  60
VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNEKSNSPE  120
MTSKNSSANL EKAVKSEPAE TASSLPLVSD PTVENRNIKR KDREKKVKGS TKKSKTATNE  180
RLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD  240
EIINHVQSLQ RQVEFLSMRL ATVNPRIDFN LDSLFTPEVS IRHLCFECLI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468024.10.0PREDICTED: transcription factor bHLH48-like isoform X1
SwissprotQ8VZ027e-82BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0D2QAM80.0A0A0D2QAM8_G
STRINGVIT_08s0007g07870.t017e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-88bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]